About
I am focused on human and pathogen genomics, algorithm design, reproducible workflows, and interoperability. My work mainly combines sequencing analysis with standardized Fast Healthcare Interoperability Resources (FHIR) that turn genomic findings into practical outputs for clinical interpretation, surveillance, and downstream integration in health systems.
Focus areas
Genomics
Resistance, typing analysis for bacterial and viral pathogens. High-troughput sequencing analysis.
Reproducible workflows
Nextflow/Snakemake pipeline, containerization, and HPC/cloud deployment.
Clinical interoperability
Converting findings into standardized HL7 FHIR resources for EHRs integration.
Tools & methods
- Nextflow
- Python
- R
- Bash
- Git
- BigQuery
- Cloud
- Docker
- TensorFlow
- OAuth 2.0
- HL7 FHIR
- Nanopore (ONT)
- Illumina
- Genomics